Sr. Computational Biologist

12/06/2023 – current
DeepLife, Paris, France

At DeepLife, my role focuses on:

• Develop omics atlases and systems biology methods
• Manage end-to-end industrial projects for drug discovery
• Participate in the company’s knowledge sharing process
• Develop strategic and technical roadmaps for DeepLife

Scientific Coordinator

01/02/2021 – 01/02/2023
Science for Life Laboratory (SciLifeLab)
Royal Institute of Technology (KTH), Stockholm, Sweden

As the scientific coordinator of the HDCA, my role is to organize and foster connections across collaborators and technologies into joint efforts for the creation and divulgation of the atlas:

• HDCA’s sample curation, outreach, webpage and HPC administration
• Develop SOP’s for handling sensitive data and compliance to GDPR
• Coordination of group leaders for Federated EGA implementation

Senior Bioinformatician

01/09/2018 – 12/06/2023
National Bioinformatics Infrastructure Sweden (NBIS)
Science for Life Laboratory (SciLifeLab)
Stockholm University, Stockholm, Sweden

In this role, I offer bioinformatics guidance and services to researchers across Sweden. My current focus involves multi-omics analysis methods in Single Cell field, such as RNA sequencing, TCR repertoir analysis, in situ sequencing (image analysis) and flow cytometry. I am also engaged in advanced data analysis training in Single Cell at the European level through ELIXIR:

• National and European single-cell and spatial omics capacity building
• Secured ELIXIR funding for single-cell omics implementation study
• Project management, bioinformatics support and analysis pipelines

Postdoctoral researcher

01/04/2015 – 31/08/2018 bioinformatician / computational biologist Department of Medicine Solna Karolinska Sjukhuset and Karolinska Institutet, Sweden

Karolinska Institutet (KI) is the biggest medical university in Europe, as well as the biggest center for medical education and research in Sweden. KI aims to improve the development of knowledge about human life and promotes health for all. During my Postdoc, my work was mainly focused in RNA-seq, image and flow cytometry data analysis. I was one of the idealizers and the main leading force in the project that characterized two subgroups of Ulcerative Colitis for the first time, with direct implications in clinical therapy.

Postdoctoral researcher

(3 months contract) 01/09/2017 – 31/11/2017 bioinformatician / computational biologist Zentrum für Innere Medizin Universitätsklinikum Hamburg-Eppendorf, Hamburg, Germany

Universitäts Klinikum Hamburg-Eppendorf (UKE) is one of the largest hospitals in Germany and the home of several innovative research and focus on bringing research to an applied clinical setting. As part of a temporary international collaboration between Karolinska Institutet (KI, Sweden) and UKE, I worked as a bioinformatician on single-cell RNA-seq data analysis to understand the role of Tr1 cells as therapeutic targets for inflammatory bowel diseases (IBD).